NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308410_1001512

Scaffold Ga0308410_1001512


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1001512 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13462
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009254Metagenome / Metatranscriptome320N
F011548Metagenome / Metatranscriptome289Y
F026891Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0308410_100151212F009254N/AMRLRELEAYLRNFLARVIGAPIVDAPAQLPVGSSVAGVLSLQSREAGKAVGGMRAMYQLELLASDAIPDAERRKLYEALANQILRTELAAERDWLPMLDYQIHLEELSIERLRVRLEVEWDAD
Ga0308410_100151219F011548GGAGGMVVISGVELVTGDRLLWAAQRGSERLRLVAGAGVQVRRVGERVYVAHALPMPATRTVRLMPTTKYREPYHLRIDDSCRFGVLPQDAQLWSDSVGGIYERGYAAAQMSIIRPPAYVSVVRKHKLVNQLHYIALLPRGELRDMGAKRDVMLLAKTGEPLALQLARLLWDDEDFG
Ga0308410_100151221F026891GGAGGMTIIAGDVVKIDTDREDGRVWWAQNGAKRARLALYAAQGVHIERVDSELYLARDAVPVWTGEEWHREAAVYLYPTEKDELHAVWLNTHCGFAVVPKDAVLWEASSFGGPKNSESKIAVLKPPCYIEEFTYKFRTPSDWYSVTLDGAVRCLGEKSRVIALALRGDKDAARLAEFKGWLSELTGELEVQDEL
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