Scaffold Ga0306926_10254775

Overview

Basic Information

• Taxon OID: 3300031954
• Scaffold ID: Ga0306926_10254775
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2174
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000792	Metagenome / Metatranscriptome	890	Y
F002887	Metagenome / Metatranscriptome	523	Y
F009284	Metagenome / Metatranscriptome	320	Y
F022254	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306926_102547752	F022254	GGTGG	MAKPPRDRRTQPARQPTYKRLSARVDALEDAISHFYNVMNEWHRRVSTLEEKLKPLAKDELH
Ga0306926_102547753	F009284	AGGA	MTRDEMVEWFKSAPMGSRHQRMLWAAHKIARLTGATEGGAYQVLLVALIEAESQPRGSIPGFSMTADE
Ga0306926_102547754	F000792	AGG	MREHVLLFCLLGLVLTATIILMIAPGAVTWALGDV
Ga0306926_102547755	F002887	GAGG	MAPKPARFAFAVGVALTILAAMTWAMAEPSPSMYPIYQPHLPLLY