NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10437379

Scaffold Ga0315294_10437379


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10437379 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1213
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011669Metagenome288Y
F054585Metagenome139N
F085065Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0315294_104373792F054585GAGGMNWVAAALIALVLGTSHYLDWPSEFEAAQDAAAAYRAARTEQERQQRFEAAVQAMCGENAAWKLLADGSVQCYTHRGLKTRKVTL
Ga0315294_104373793F011669AGGVNDNDDYELANWMHLIASCILGLFALVGIAGLAGFLWGML
Ga0315294_104373794F085065GGAMTKQEMLNLLKLLSTIEGAIFTNTAQVPDHLFEQIGAAVAVLEREILK

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