Scaffold Ga0315294_10292295

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10292295
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1570
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y
F086582	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_102922951	F086582	GGAG	MIDRIEEVQCMIAAISHCHDKSADHSSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPN
Ga0315294_102922952	F000403	GGA	MSDYVEIINPRTMTCKLMENGEIVAEYKVEQCDKCSRLVKFDEFGYQKGYDRTENIIWFCGDCR
Ga0315294_102922954	F001897	AGG	MAFMDSYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDHAHGFLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPVADHNYWTTKFGEVPSYKTREEAEQADETGWAVNGVPMCAHGSMRWNQSKPDAPKAWAGYFCSEKAKEKQCKPSWYVLTSDGTFKPQV
Ga0315294_102922955	F005503	GGAG	MTSGEIGVFIFMVLACILWAICSYAVGYKEGHKDGYQRGKAVGRHASGQAMR
Ga0315294_102922956	F002433	N/A	VGGLVLAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIENRLDQLLLEIALKK