Scaffold Ga0315294_10175611

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10175611
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2151
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_101756111	F009266	AGGA	MTSKEIKILDKLIQELCEKQDRIKIMRQTLGINTDFDFLREVEIIESLYKSVLENRKYDKATYFSCATSGWHVVYLRDKKTYKKGEENRIQIYFSFVWTDNLD
Ga0315294_101756112	F002398	GGA	MIALISVFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEEIPSFPRLNIIEKSKFDFFAYLDTIGIEHSKVGNYYFFNKKR
Ga0315294_101756115	F002406	GGA	MSDRLRDELSSEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFENDE
Ga0315294_101756116	F010618	AGGAG	LTLKELILKLQELEKKYEQYSKDTEVVIAVHSKNEYNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIIQED