Scaffold Ga0315294_10150391

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10150391
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2361
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005775	Metagenome	390	N
F008615	Metagenome / Metatranscriptome	330	N
F016114	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_101503911	F005775	N/A	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMASGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNAGKLDQVVSKELDTYQTYHLKNLLNTNEQP
Ga0315294_101503912	F016114	GGA	MIIKDWQAAFFDSRDTEVINVMAANARRMLICQRELQRDELLRLKMKYPHLTTRD
Ga0315294_101503914	F008615	N/A	MNKPDTFGAKMFGRFIRKGWHISFTDSYQDRVCVIPPDRLNAQHVFGIYIPVMRHTWQPDLKREWWAALQSKNTMLGPTFEASAHPDDIERFAAFATWIGDLLRNPQKFT