Scaffold Ga0315294_10033420

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10033420
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5542
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_100334204	F082704	GGA	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFFIPESKVKLTEQTST
Ga0315294_100334205	F021113	AGG	MNRNILAAILLFFGTSILWLVVCWNWWGYTLKKSVQENVQTQDSIINYNEGEYQMLLEEQLELQEQIAYYENAQSSAKTTYQRTRSAIVIRDTIVRVDVLRLVNSCDSVIASDSLVIDNLKEQLNIESRKIDNLQEVVVAYEQKEDVLTEEINTLAADNKKLEKQKKRRNRALVVTSSVAILSTFVLSILL
Ga0315294_100334207	F039140	AGG	MKEKLKLWVKELVSSSTKVSSKRIIAIFVVINLIVFSYVATFTTYIIPIAMFDTLALLSGGLFGGAVIERFSNQKSNGGTTQDNSENNS
Ga0315294_100334208	F027518	N/A	MNTETEIALIHEQLQGMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVIGGLIVQFIVKVL