Scaffold Ga0315294_10005116

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10005116
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14381
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F025263	Metagenome / Metatranscriptome	202	Y
F051095	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_1000511616	F051095	GAG	MFFEDPEASIACFSGSITESLTHPRGIKKVIPYLIKASLVGYMLATFVSPAIEERFKLTKNEAIATAFIIGYAGIRILAAAERIAEKELGRRLGKDKENDISQ
Ga0315294_1000511618	F010682	GGAG	MVYAAQTNWKYDKNLYHPIQSGPQRTGDNLNLTDTYLTISSGYVPPSGVQQTWYGVNDEGADFGRIPVGPPNLNGYFTTDWRAVPPAISGYWTNYENIQPHASGLLDSYVGFRAQGIYSNANASVQTAYGPEPGLRNFGTHTWYGEQVPDNQLYSPFQTPSSNDNTVDGGGITGGGVTHPTIASPTLTNPTNDTSGSRAAWVYHYPVYCQSLTETRYTGVPGQMGSPVRNSYRGKSLRYVPNYASIYGVLGEGVRNMVRTFSPGTKI
Ga0315294_1000511620	F025263	AGGAGG	MTINPNQLSVAKIYPGNYTNVLRYWHEERTMQFENANGVQTSFTDQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGQNAANQPFLNANVIIPSPDFHKDIRADITDGITVPSGAFVYRTSLRVDGGDVVSSGVAGGSATPRLTLIPAVGQGLRDTTTVVSGQFGTTLTGSNSRIVNGAVGSTNIINSSSLSVLTADTRWKLFTTANLGGSVASGLAQGSGIYDPRAAANKLSGKNKALAICEVCWIVADQPPERSDLALQPAGVIESSIYTSTSPS