Scaffold Ga0315294_10004819

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10004819
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14789
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F004005	Metagenome	457	Y
F023064	Metagenome	211	Y
F100720	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_1000481919	F023064	GGAGG	MNANEIIDNIKIVADLQYEGEPAQNRLAYHVGLLESHLRGYIQTTEIAQEYIKELQMELVAKESE
Ga0315294_1000481920	F100720	GAGG	MKYPRTMNEAFPRTVEYGAAIEIHVAQHSTADKIIRALALVALIVLALDIFIWRP
Ga0315294_1000481922	F004005	N/A	MTNATQTSRNEQMYGFADIDSYIESVKDSITYKFTGGNMVVAGLMSDAQELIAGGAQDRSRQTLNIAKHILFLIMDGELVSTVERK
Ga0315294_100048198	F000961	N/A	MSDIDLVKYGVLWQKVEDYERRFDDMDKKMSKMENQLEHLVALANQGRGGFWAGMALVSAISSATGYVSHWIGKSN