Scaffold Ga0315294_10000663

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10000663
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37393
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (57.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019256	Metagenome / Metatranscriptome	231	Y
F051883	Metagenome / Metatranscriptome	143	Y
F077223	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_1000066317	F019256	N/A	MANPNPTEYGQQDAAVNLAEFQQLLNRLEGSKKRQVRQRAVEDRRGTFAQGLAGMMSNF
Ga0315294_1000066333	F051883	N/A	MNFPDLQTITLVGRIAALTAITTEDERECLVVTLYHRITTDTTITVKFLNSNGLLTAYTNNNLVIGQELTVIGKLTGIRSFYMKDDVLTPLKQPEFQLKCLDYAFGSRPQPKEQPEPAPEVTPVTSKKKAKVEPTLDPVAF
Ga0315294_1000066348	F077223	N/A	MTFLAAFKHLIPNFHAYSDDERRYNIGATWTAADGLQDYHNLEMRYVRNSEQLALQGQPQPDGSWKYVEPNGCVHTMTAERAQAFMQQTHEHANIMCTMLDRLREAGLMDNIVDTEAQAA