NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_11181495

Scaffold Ga0315904_11181495


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_11181495 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085603Metagenome / Metatranscriptome111N
F101030Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_111814952F085603N/AMKVQIEFDTDNAAFEDSFLMEITRTLQQCKSALLDSERGTITIRRPIKDSNGNRIGVVSIGNN
Ga0315904_111814953F101030N/AVLTMTLTQFQQAFAIAKDFNRDLSNVDDSILYGYGLSSFKPVYTTLEAVAKTIRWQALQFNGEWNAEALNEVAENGRKNFLILG

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