Scaffold Ga0315904_10346879

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10346879
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1368
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005878	Metagenome / Metatranscriptome	387	Y
F018948	Metagenome / Metatranscriptome	232	Y
F085644	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_103468792	F085644	N/A	MAKPHSLKYIKQLLEWGFDKEFIARDMGVNLASLEVRLNRAKKREQDGNQGSKFETSGD
Ga0315904_103468794	F005878	GGA	VGVSEVINEMHPFKCGPCKKVTPHHFITKYESEIEPDAWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI
Ga0315904_103468795	F018948	N/A	KPIQTTKPALAEFVKEQRPNDPEPIVWDVSAIAEELGAEVIDEIPICNHGPMILKQGSKEGKEYRGWVCTERDKSRQCPAKWMKIGSDGKWAFQK