Scaffold Ga0315904_10303435

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10303435
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1494
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F002387	Metagenome / Metatranscriptome	565	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_103034351	F001019	AGGAGG	MSNYGPSLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDMPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMRE
Ga0315904_103034353	F001781	GGAG	MKPEDKDKLNECLKILDSTDLGLSLVWLWTWSTINNILDDDTYRAKVTQDQMWDHLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDPEWEEEEEDADE
Ga0315904_103034354	F082666	AGG	MIETAEALPESIQRAVDLGISGIDIMHGELKIMMLVAEQELANAQAIEDETEEAMDSMERKYWEGQLDALVGLYKLTYDISFAIGARDEARG
Ga0315904_103034357	F002387	N/A	MASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDEFIQGEFNKFYNLKEGDEDYLC