NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10269918

Scaffold Ga0315904_10269918


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10269918 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011222Metagenome / Metatranscriptome293N
F018136Metagenome / Metatranscriptome236N
F044972Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_102699181F018136N/ALLTLPPKRMITDSTYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHAALFAS
Ga0315904_102699182F044972N/AMPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKSATISLDGVVNGGVAYELANVLTLANDTSSYGVSGGAVIVDSVSETTGAGTFKTITVSATQYPEI
Ga0315904_102699183F011222N/AMDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK
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