NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10149420

Scaffold Ga0315904_10149420


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10149420 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2369
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F049620Metagenome / Metatranscriptome146N
F051874Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_101494202F049620N/AMTPAERDEKIVGILTKICINVLVKNLFDKNGVRVYEEVLHELNQLPVNEEEYTRCNHAHAFLHKTAIEYLQKTIVFNEEHRRK
Ga0315904_101494203F051874N/AMTTLELIEQKMEIALQAINSILPEGYFVGQALSSTDFGNSGYLIIKKECPVEYLINVCKVRISDHSATNSVRQATEIMIDLVRFNLDELILRVERAVYPERFEQVQIRTLTGDVLTSNFQVGGKPYTTLTEPTFLGEVIGKKGNLLHRYTWMKEDVRFEWRKK
Ga0315904_101494204F003786N/AMNLAKYQPHNQDEQSIIESRPNRIANIEPKDAFRNVLNIISSLFPVYGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLVYRRKIIAAHDNEVAALRHNANMEEKARKAREELYANFPTMLKEFKGKDYTTVPLYWYDMCVQFGMIEYEEGEKRALWEEAQDLALKEPPESMDLMTIRSHSKKIEQGNTRRAAVIAQQLAVWRKVLK
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