Scaffold Ga0315904_10148542

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10148542
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2378
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085644	Metagenome / Metatranscriptome	111	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_101485422	F085644	AGGAG	MGREDKVGRSTHSIAYIRQMLEWGFDKEFIARDMGVNLSSLEVRLNRAKKREQDEKTE
Ga0315904_101485424	F099166	GGA	MGIKDLSLKLAAISLLADQAKRLKDELRAELQGEMNNLGADRVKAELGDEVIAYITTTKPKFKWVIKSDRKFIDWVKTNVPSEIVETVRDSSIDKILEKFNYLDDVVIDPNGEIVDWLEGSESEPYLTTKFHGEGRAKLRDAIIGLNGANEIDVRKVLELEG