Scaffold Ga0315904_10118920

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10118920
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2739
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014089	Metagenome / Metatranscriptome	266	Y
F024931	Metagenome	204	N
F033645	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_101189205	F024931	GGTGG	VKMTLTREEEVICMLAAVKFVADNNKFSENPQRHQKDLGTFEYLVESAESIGSEWVVAKYFDLPFDPYEQKRKVKADVGNGIEVRWTKYVTGQLIVHEYDRSTDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0315904_101189206	F014089	N/A	VGDIQMSDYMELINPQTMTAKLLKHGEVIAEYKVEQCDGCALIMKLDAFGYKIGQAGEKLAWLCGGCR
Ga0315904_101189207	F033645	N/A	SGRIENHIVEFNAEKGYILVQTQIFKEYEDEKPSAIDYAFGNVATYNVQMKKFFCEDTVTSSIGRAIGLLLGTDKRPTRQDMEKVETISTKVARSTADDYDPWAQKHGDVPSYKTAAEAELAGTPSFGSSADGVTLRDAIAEIDGQLGGQLVEEAPKCPHGHRVWKTGKKKNGEDWAGYFCTERDKATQCAPQWYMFGSNGKWRAQ