Scaffold Ga0315904_10117829

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10117829
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2755
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F060718	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_101178291	F003066	N/A	LMAKKEPVAWLYEEYDVKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGEPVEEYKGLSRYDSKRLTEAYGGL
Ga0315904_1011782910	F060718	N/A	ILKLIVVSLLFVAMGFSILFMYAMQILTKALTHIDKNVN
Ga0315904_101178293	F011384	GGA	MYTKLDDQRQAKIIIKYMETHPNCSIKELARECIINRKRIRYIASQGYFTLPKWNYNSELDKRFENREYVSVNVGREYGKWTGY
Ga0315904_101178296	F002037	AGGAG	MNKIYWVFIVVMAALAIWGTEKAIGQTTTIYAPDGTVTVCQVNTNGTVICI