Scaffold Ga0315904_10099307

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10099307
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3065
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014238	Metagenome	264	N
F018353	Metagenome	235	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_100993073	F018353	AGG	MSKPKAKKQTIELPDVMAGELIRVVNTAHEDGKLITGFVCILEVFDGKKKTIKISANADMPQHSVFGIINYAAEKYQFTLAPDEDEDDDFYDPNWYDGQ
Ga0315904_100993075	F028786	AGCAGG	MNLLQFFNHKQFSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNVKTKVK
Ga0315904_100993076	F001805	AGGA	MTMAIEKIFVGIDNERVELSGQAKADFLSDREALVESERLLEAEYKAKQEARESAIKKLAEIAGLTKDELASIL
Ga0315904_100993078	F014238	N/A	IQRILEETLFIAWEDLSNTQTWNDFTTETWANYGVQGIDTIDPGRYEVLARTAEIQQAYILTDETQQSGLGYLYDTTDFEIGYADAERRITNYSDNLIELDANLANADIQTRLQTADIVNSVVIQYDDPILEEAAQNDSSINDYGLLQEIRNTILAQQIDAQEQAVNFVNFRGTPRTSLEEVSVNLANDAMTNTVRDDLLAVSMDTLLYVDNIPVGLISSGFFEGFVEGWTWTLGRRNLELTMSVSNSIYSTLDVQWEDYNPLTQWQNLDNTTMWLDVI