NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10096612

Scaffold Ga0315904_10096612


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10096612 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3117
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034900Metagenome / Metatranscriptome173Y
F043357Metagenome / Metatranscriptome156Y
F048254Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100966124F034900AGGLGERVLVDDGGGMWQAGKVARVIEGEQGAVVYVVDLRNGSQVWAPAEAVNPDPQRTRGADPTPEQIRQRCLEIQREWPEEVRRQRDMREQPVSWSVPRSHYVRDTQTGRTDFEH
Ga0315904_100966127F048254AGGAGGMVGDERMAAKLRWLEIGETYRLPARYRAEVTVRKMLASTGYRWTVVEVYTPKTKTTQFTVTRAE
Ga0315904_100966128F043357GAGGMSENIFAPFFGAVEDGAREREAREYGRDGPHSRWDPGEMPWTIPRRIHPEYRERLSSDPIDWPTVGQSGLTSDEQEIQ

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