Scaffold Ga0315904_10080007

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10080007
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3503
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F029017	Metagenome / Metatranscriptome	189	Y
F031754	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_100800071	F018127	GGAG	MAKKENNWIPWLIIGGLVLYVVNQQPKGGGDPSRPSAVTEVVRSTIPSIRAAYKQAFLDAAAKIEAGEIKDQEAWTKFIADNAGGKNREALDKVYSAIDELKLPVTFAGREAEIARINKEIASAW
Ga0315904_100800073	F029017	AGG	MDELGFVTWKIVQLVLWAGPFGVGAFLAVCFFAGYFLGLKVSRIKRSKPMGAQKLDHIKYDILPDGTLGPGDNRGLEGPE
Ga0315904_100800078	F031754	AGGAGG	MVALLLGLFWLCSEPAKDPTQCDLPDSSALIEELATVKESFTVQPDHIVDTNKMVDPMPSPSDKPHEKTKREILIFVSKNCPPCEKWKRCEMNRFLDAGWSVGIVEVHSYGLTPTFEIESGDKKATIKGYTTLEQAAEAVR