Scaffold Ga0315904_10066924

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10066924
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3916
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F040073	Metagenome	162	Y
F044444	Metagenome / Metatranscriptome	154	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_100669242	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQCIGTDEIVDEFINFMRGVGHLELNIIERIHEISSQYLELYNSNKEMFLELQQEELKVIE
Ga0315904_100669244	F040073	N/A	MLKFEMSPEDMFWQEKMIRSINDCSSMNELKEMATLLTKIATQRQIAIKGLVADAMELMKENYSHKLPVIND
Ga0315904_100669246	F002333	N/A	MSTQLQQQELNIAQSLIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQTYPRELIKLAFTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYTHALGHLTSNAKLQAHWADKFIHISDVAKITAILQSDQTDIGHLVAPDGMRLANRPIDMDSELDDGTKQDSMFGEPTCSCGSFQRQLSNLSSFQEEIEGFRPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWFYAPPKDSISDGRFVLLYTNQGAQAPLSHWRNYKPNEVFTQHHAWDLFFNMMEASYVPFPGIALPQLKSALKK
Ga0315904_100669247	F044444	N/A	MNTIIEVSDDILEYARQLATQPLMTKPMRYDLDLPEDTHWELVKLAAELKMHHEDYAQNVLIGHVESELDRKAQA