Scaffold Ga0315904_10055259

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10055259
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4401
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009805	Metagenome / Metatranscriptome	312	Y
F033011	Metagenome	178	Y
F053232	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_100552592	F033011	N/A	MTSNLTRFYFEFDDECRTGCLANLAFKDIETIEADAYEKELQSQEVIYTRIDF
Ga0315904_100552593	F053232	AGTAG	MNKFLLGLQGYLSCLGWMLPALWEWILEMSPDLRFWKWHTNLDDHLWYAERVNGRIAMLTLTFLLLWCLTHDLKLNEILF
Ga0315904_100552597	F009805	AGGA	MDIHVISVGEWMNSLTIRMDNAVDGDCFCLPTLMHLHAYNILKNNSFPDKDFKVEITEPEQA