Scaffold Ga0315904_10053492

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10053492
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4489
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F005558	Metagenome	396	Y
F031031	Metagenome	183	Y
F033321	Metagenome	177	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_100534921	F031031	GGAGG	MESRQVSGVQAIHHRNYRRARDRALVRLSHLYADEYRRLLVEEREV
Ga0315904_1005349210	F033321	GAGG	MSRELEVLREEYKRAFENPIFDDPKDYCVLLDLIQNRIDEIEIRYANY
Ga0315904_100534923	F000821	AGGAGG	VNKEYLEAKFDLCIDQAEKNIKEEEIAEAIKNLRRANSALSQLFGFEEEVESE
Ga0315904_100534925	F075748	AGGAGG	VKKQEILSIIDSTQNFNAYIEGIDTLNGQALSLVIDVAGVDGEEWTDEECLETIKEIVDLTNAYKNTHDWSN
Ga0315904_100534926	F005558	AGGAGG	MDEVMYWSDLAELTHATQVEKFNFCMCEDNEGQENPYEDCPKEESK