Scaffold Ga0315904_10019543

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10019543
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8188
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_100195431	F029443	N/A	MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVRPAIYNSTTLRYDLVLLFADLLTEDKSNRLQIQSDQMLVALDVLAKLKLDNDYTFNTAPNSTLEFFQERFDDFTAGVSISVQVTAPMPLDLCSIPTES
Ga0315904_1001954311	F008081	N/A	MEEIEILNPFGFGRASKVMDENRKPAEWWIDYIQFNEVVSENEFYILFEDGFLIKKGRSKFKSSQYLKGDRFKSFKECHEFTF
Ga0315904_100195438	F001775	N/A	MKEMLDDERIRIATISFLIGVILAFVVYPRPEVETVYKTETKVETDTIYSHVVDTIYVPKTRIKTQVLRDTVLKEYQPKISLFKTSFPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIIKKPKGIYLGAGVNSLLQPSAKVSYLDNKYLFEYQFQPLQGVHQVGVSKKLF
Ga0315904_100195439	F036704	GGA	MLSGQTIDWKSLGLEVQHEWSRRMVRIGDIQYVQELLHDIQIIYFYDNTSCLIKGRYQDIRSEILHLDQESDLD