Scaffold Ga0315904_10013583

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10013583
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10186
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (32.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F003687	Metagenome / Metatranscriptome	473	Y
F021097	Metagenome	220	Y
F035274	Metagenome	172	Y
F091979	Metagenome	107	N
F105068	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_1001358311	F021097	N/A	MSNSFVDSCVAIVLGTGVGFLLSIGGQKVLNQHYKDTCHTRPQHNLVYTRGFLGDTYYCIHSKYQ
Ga0315904_1001358312	F003687	N/A	MNYQAVEQLLTQDARLLARRDSPVIDTELEAQRQAALELFFQWQDGLAQFQDLVPFCIVLQRKVDLNRDLLRWERRHED
Ga0315904_1001358313	F035274	N/A	MALTISKEELDSALAVFKINDYYLQVDDDNVIYLHWVSTTSQARDYIDAFLECLDVLIDECWVDTYGSHEQGNPVQLPDEDYICCRYILATI
Ga0315904_1001358321	F091979	AGG	MLIAGRYSVGGSPFLEGWKQEYMKAQGSMPPPDKVMDFLISVVRNESIPMQNKQAEIRMLDQMQRFGGMGSDR
Ga0315904_1001358323	F001165	N/A	MTNSNAPRIPDSIDTKRLEAMQLVAKMKEAADRNGIGFIGGFISPDGQKFVMTNMDEDDTNALMPENLK
Ga0315904_100135833	F105068	GAG	MIIYFTLTTDHAVYKFQVNKEENLVRVTKMILKAQCPGEWHRSTLMTVDAGRKLVRQLQA