NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10010652

Scaffold Ga0315904_10010652


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10010652 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11853
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (73.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008943Metagenome / Metatranscriptome325Y
F048267Metagenome / Metatranscriptome148Y
F071163Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100106521F071163GGAMNKTQSALERVIIELDSWCDNWMPNSYNDPRISLRQIADRARDVLEQEKNDYDFK
Ga0315904_1001065210F008943GGAGMRNFDGIDWAVLSVFFIVIVAGAIITYDAQQQRALFQQTYNKNLECRQALKDQTVGRVNEICGAVPVIGDFVK
Ga0315904_1001065211F048267GGTGGMTDKEWETSLKSMNEGVKKWVNEEIDKIKYNIIKDIINGELNEKL
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