Scaffold Ga0315904_10002433

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10002433
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28872
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y
F084221	Metagenome / Metatranscriptome	112	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_1000243310	F082692	N/A	MTNPQEDIIFSMTLLRSGVPGKSKEFKQASGIHHARLKVWQIRAINYTILITGVSLIGLTIYSVI
Ga0315904_1000243328	F093876	N/A	MNLFKRKKEPVDLNAKLLPELCSTYIIQWNYSDEIGMEATYAENIPFMFDARKCVGIQAEVEFRSDGTYYVGQRTLALMQGVDNALVIDVPYNEFKKHFQELKSNIITNDYIISRG
Ga0315904_1000243333	F072341	N/A	MSKELAASVLQSFNRSLSAEEKAIAECVSSPKLHSLSEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQTTYRSTSVKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKSKVWRELNKSLILPEAQSKPIEPTDPITALHEDAERYRNGKETWVEISAPFNCQRLFRQGIYKKSQWLPEVWERFEDIAKQKVEAKFKASNKVILGESAQSEFDALQKIELSRIVYIDIIKQLNKEKS
Ga0315904_1000243338	F066778	N/A	MLKAQQPTKIGERTSSIIHMSYNREPDWNKLKPSIDWDEMEEKLADKLSKYINKNNTIMNQSVVKSQKFVRDWNGPSGTIYYFDLVLENGEVGQVGVKDMQSPKIAVGATIHYTAEERTGPTGRKSTNFKLQNPNPNPFNGAGKGIVQSAYTPRKESPEVQNSISRSVALNNAVLFCKEQKGAKASDVIETAEIFLAWLKEEEVKVSSPINTKLDEAADDEMPF
Ga0315904_1000243344	F077297	N/A	MTQQAKNQIKGAAVIVVAVTICAVMQMMYICIKDSKKAIEGYERRAERATHVIDSLEATNVQRMLQIEELNEQLERNTAIYEANINAIDSLDKHGLRRAMHNLLSSLTEERYPGQSNE
Ga0315904_1000243345	F047677	AGG	MKWLKSIFSNESDASSKRVASILALLVCINLSYIGTFTDYKCPEYMFDGLLILAGGGLGLTVIESIFANKKKSNDSTSQESN
Ga0315904_1000243347	F084221	N/A	MSNHQQQVAEGVTGTISSILLSVPAWMLDVEFALKIICLLLSGVASIFTIYKMNKKRR