NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10001821

Scaffold Ga0315904_10001821


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10001821 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33667
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001464Metagenome / Metatranscriptome689Y
F002501Metagenome / Metatranscriptome553Y
F006841Metagenome / Metatranscriptome363Y
F014144Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1000182125F002501AGGMMKCDKCKGRVFVDRVFSQKLHVELFCIMCGKRWMINKDTSPLGRWLEQAEKNKLKDLAISS
Ga0315904_1000182126F001464GAGMARTGRKKQTKRFSYFFLNNKIHKVLNYSRSKDELVAWCYPDKKRVLYSYSQVVKNMENAYSTKQVAQILNKHKITIEDYILEGKIRYPQKVYPISNPESDWYKFMYSESDIMDIHEFILESGYSKNMPSKNELRALLKNNIILYTKTDSGFVPVWKAE
Ga0315904_1000182127F014144GGAMSGRFVVCEICGKEIELRWGIFGHDTLSRHRKAEH
Ga0315904_100018216F000258GGGGGMPNYKLDAMFELRKYMWNKMKASNIFDPNTYYADNLDETLIPIVPVQQQAEMSQFLSGKKHIVYDKIGMSYKDNWLICCEQVLFTVYSTDILDIVEIRNFMTDEFRRMDESGKDVNKWSGLSDKFKFHTIFIADISPTKPSEEMQGFLATDIILEIQYSRITDNNGRFA
Ga0315904_100018218F006841AGGAGGLATTVYDVEEIELQNGAKAKLKPLSIKQLRKFMEVVKKIQDSQEEDVTLGILIDACAVALETQLPDLVADRDKLEEALDVPTINRILEVCGGIKMDDPNLIAAAVLAGQN
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