Scaffold Ga0315904_10001561

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10001561
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36600
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (49.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F012111	Metagenome	283	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_1000156118	F000922	GGA	MPKEVWQKACSLYLAGMEWDAIADKLKVNKTTLCKRASLEGVTKVRKEMKAEFPSEISVKTEKSLEALSALVRSKLAADAASTLERIETYDLEGLKDEGLRETILASVAKRSALTFGWSETGEQASVSINLLGSMPDRSVELNVTSEQPKE
Ga0315904_1000156120	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSTSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWQPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALSQIICS
Ga0315904_1000156139	F004664	GGA	MSGYKILNEHNVIPGGWNYRVPETGIEIPAGSLPQLREFVRNHYAANAVKVPDNLDILITEYQCRNGADCSYDEIEIPKPKGLKSLQIGDVIRFSMSLIHGLTVGGGKVDQAEAIRRASICAGCQFNRKPLGCTGCNARVLKEAVRTLSQHGTTPLDDQLQSCEFCGCFIRSMVWFPIETLHKFTDATENANLPAHCWKKRPCTET
Ga0315904_1000156142	F012111	AGG	MSERAPRRYTDGSVTFDGGIDAGVMPSEVDKNQVAFAVNANFREGFISPRPGFIQKDYDLCVTVTADNAEITADQTNVTADGWSEECYGPQGLTGTFQCALPYISDDGRTFILLMISGKVWLYNCAQNNAQNLTTSPDLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTSLRRAKDDEIKTGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFSVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAIDGIRSFIIARRSFSDWGNTPISGEMTPIVENDQSSLLWASSAVVFDNRVLMTSQPRFNSEGVIHKAISVLDMELVTSMRKKAPPAWAGIWTGLNILQLVKTENAYGDNCFAIARGSDDSIQIWEITKSEKFDMNLSEIPKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDRLEGDVSFNVTYRPDQYPGWIEWIDFAECATVTQCFDLCPITNFKPQYRPKMRFPTPSDAPCNATISTPARNLYEVQVMMNIIGYCRIKSLRVHAYDIQESSVGECRTVFPACTPLDVCDINPLTYTSE
Ga0315904_1000156144	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLIDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFTQLTGVIREATNTASRLYEYDATALSELDLAVYDPDETLPQYRRSLLTDRCHNDEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAIQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0315904_100015619	F103133	AGGA	LDCRQLDCRSLKPYAREIMRYKIQLETPNGWSNLRESSDGGPYKTCFYPTRMDAVGAVEEFAELLESTRIVPANVPETENIYA