NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1030642

Scaffold Ga0308417_1030642


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1030642 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2488
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F080999Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10306421F080999GGAGGMPVTSGLVLRGLVAAYREFVSRKDGRVYRIVTVYGDLVSGEDVLCQIDG
Ga0308417_10306422F008135AGGAGGMRAMNDSRTERVLTEAGASIARVLDDRQRRAVVLAIEVCWYIVAALPPDEELTFGDVVRLLRWFVKGFGEDAEADDAGD
Ga0308417_10306423F002229GGAGGMVTLLTFDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVVCNRRVTATLAAVGWCWVADGLGARGYWSPALACIPGEVRVLCGGCVWDGGDDDDEG
Ga0308417_10306425F004024AGGAMRSERDYVRQPSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRIAPIVESSAIRQSPGASRTLRDALRALSLEEFVRRRDERRSDR
Ga0308417_10306426F002978N/AMLVPWADRRLWFLQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSSLPSSLPGAPGA
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