Scaffold Ga0308417_1026939

Overview

Basic Information

• Taxon OID: 3300031950
• Scaffold ID: Ga0308417_1026939
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2733
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F008135	Metagenome / Metatranscriptome	338	Y
F063723	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308417_10269392	F002372	AGGAG	MPTRREDALWSVVHRRASHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPVVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSAGGSDSWA
Ga0308417_10269393	F002795	AGGAGG	MATSGLVLRGMVAAYREFVSRKDGRLFRIVTVFGDLVVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFVRDASGRPAVRLYVDEGVR
Ga0308417_10269394	F008135	N/A	MRAVNDPRTERLLVSAGTSIARVLDARQRHAVVLAIEVCWYIVAALPPDEDMTCRDVVRLLRWFRNGFQEDGQEDGQEDGDGD
Ga0308417_10269396	F063723	N/A	SEAARCLTRDMILWGKRGVICVYTSPSFATVDVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG