Scaffold Ga0308417_1016618

Overview

Basic Information

• Taxon OID: 3300031950
• Scaffold ID: Ga0308417_1016618
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3820
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N
F076976	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308417_10166181	F007033	GAG	MQCKCSQPLWALGIPDCHPVLRPIRRIAFERVLDESKNPPAFDLINSTLYPNARRLMTPILYNVESERPDAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGKRVSPFEAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFAAAGLLNYVSRIAARIEPAWNPPQLSAVVYALYARGAGDFYTPITGLAPYLELRNNANTLITTNFTEVAPGFYQDSSLSLSPSGNPYTIRVGPGAPSGAFDYTTAVAQFSV
Ga0308417_10166182	F024322	N/A	VSLLRKLSNARQRRYLRLVDPTLQQFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDVSTYAFPFSTEERVAFHPPQIFVAHYNEFSQIAARQRDAFLAVIPDARMGKSEWGEVEHEAFFFVPAQDTEEFEVQLDRIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
Ga0308417_10166183	F044249	GGCGG	MTKRDALLALLGASLTIVAKKYVAVLTALIVLGSLVNFLGWVHAIISGEGFKAVKVLQGTARLVFYMVFYLALLVGLEQVASYLIPPLLSVSIIYEASLALKKAVQLNIIPAGLVRQLTKVFRREPPEKA
Ga0308417_10166185	F038584	N/A	MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRGARKLMQRYVQKTTVGANTPREYIGEAFYVIRQPVIEFIQDYLRTETLDVLAEITQNRLNPFTGAPGTVGEGAAKPSMSTTPQRISTTHNKIAFADLITDEAIFSYPNIVDFLIWHGAYRLEGLLHNNLIAAMAAVATAASLPTGIISPQVADLLIYMRAFHDLQAAIGPRGDWPAQAAILPFPYYWQLRFGALKDTIGQYLQLARQLEGLALIPAGAAQTNPTIVFNENELEVFFFGDISVNFGRVFDGGSETNVRRLAMDLYYAPLPHAGRPVLVADTQNAINSMV
Ga0308417_10166186	F076976	N/A	LYVALKLDRPLEDVSGVHLSVGGFARGGAREDGAYEIKEFAVFEASLTPTPAQPNSELVLLMKTLTDMATENEKAPQEPAGAQAVQKEEKVSVQATQKVATAPSALGYLRKQDLAQLEAIVTELMARMEVLEGLQAQMTDIQRRLADLEATVSQMQGITQEAMAQSVEKALKVVEEKVQPLAKELAKTMLLVSEALKKTNTQRI