Scaffold Ga0308417

Basic Information
Taxon OID	3300031950 Open in IMG/M
Scaffold ID	Ga0308417_1012875 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031950 Open in IMG/M

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4515
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4515

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004170	Metagenome / Metatranscriptome	450	Y
F009196	Metagenome / Metatranscriptome	321	Y
F022155	Metagenome / Metatranscriptome	215	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308417_10128751	F022155	N/A	VWEMLAAWQREGVLERSGRGRLPEPPLLLPDLARTLKWEWNDDVLLAMAGYIPGAVEVSAYPEAAQAVVALWEALGRNDDGGIRRAAWVARWNLMRAGVLTAEGQGRFGSDYVEAIGSEKCWEVLLALAQITPPGTFPLAIWTRRLSDQGNWCRLAPRLAIHGWLVDMAGGGQRIASGRGDRPVARTSSE
Ga0308417_10128752	F009196	N/A	MRQVLRRGGQDIGDGTVAPFVNLPPEVLPDFRRLREIETALAAGQMPPSPDTGTGNRPVSHPRAVPARLPEAHPRSGPPSITDRTTGRTAGSEPPARQPFPEVIRHE
Ga0308417_10128753	F004170	GAGG	MSDPSLFASPLVRQAARNLHRLEVLTANPIWTDMSCRWYFWRTRRMMARTPDETAAWLPALAFAVSCEKDASVLAELARQPLPEPLPPEALPWRDRLIQSWEQYRPDTAWEKTIHLAALVRLDRRAERLPEWLREARRALDFGGYDRHLRLAALAGWRPRPGDGPPHGDRAKAAQAWVRFWEKLYQHPGSQPDGLFAAAALLHLAKAGWLPSGPSPERLREEFRQRVQQWRVSDLERSVLRMLLASVPADASAPERGRQDIKAWLELTRKDVDWKKREAVWGMLAAWQREGVLERSGRGRLPEPPLLLPDLARTLEWEGNDDVLLAMAGYIPGAAEVRAHPEAARAVVARWEALSRDGGWEFHLAAWVGRWNLMRDGVLTAEEQGRFAADYVEAIGSEDNLELLALAQITPPGTFPLATWAGRLSDLSDQNDRCRLAAQMAIHDWLVEVMERANGEWEGRPAGRPYEQRVASSDLPLAARQYGQFPELPLRLAITRRQMRQALRRAGQEGAGNRPVAPFVNLPPEVWPDFRRLREIETALAAGQMPPPPDAGKGKRKRMGHLATLARLPEAQPRIDPTNRTGRATSSEFTTRPSSLETIRHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308417_1012875

Overview

Ecosystem & Geography

Associated Families

Sequences