NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1007236

Scaffold Ga0308417_1007236


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1007236 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6509
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025421Metagenome / Metatranscriptome201Y
F038570Metagenome / Metatranscriptome165N
F042758Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10072363F025421N/AMIDLTKVRRIDRSAPGSFMEYARLQATIAEGDLMAIARALENYGVDTCELSFNELVDVIKHIAGEPNPLVATSASE
Ga0308417_10072364F038570AGGAGMPATHLRRIQLGQQTAFATPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPQVYTIEYGATGAEYRVVGGILREWTLRYEANAGVTENWAFIGRSVQANALTGSLPTRVVTPVVSTHASWFMDNIGTAHGTTPIPGTVIEAELNINTNRHLKMFEGSQPITWGEGRWEAQLTLTAEFNATAKAWVDALLTDRVARNIRANFVETANTRELRVDFVGLIGEPVELFGDRDGNMTAELTFKALVAGPLNNWLQIRTINGVATLP
Ga0308417_10072368F042758AGGAGGMKPTDFLNIAGRLPAQAITGATETTSVDMQLLRGVAAVCIVGTASTPPSFKIQSSADNSTFADLTGKSITSVAANSEGIINVRDEDLPEGHRWIRAVVNGNATVAVVFIGTSARNNPPAKLASTTIVS
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