NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1000986

Scaffold Ga0308417_1000986


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1000986 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19809
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F018115Metagenome / Metatranscriptome236Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y
F043176Metagenome / Metatranscriptome156Y
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100098610F025895AGGAMSDLIAWVIAGGVILALVNSNVADGLLSALDLSDNLKRAADWASGVRGFPAVVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVDIWQRSGLFAPLPDVIEGAAAVLVKVGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGGR
Ga0308417_100098612F044842AGGAGGVEEIELWCGVRGNTFQSTQCVRFVGEFLAVVDVARADEWVERCVLYRTEDGRVALHQMRLSLLDDGIDIAEVYVLPALDAGEGERGGRV
Ga0308417_100098615F048124AGGAGGMATISIWRGYRDWDAGSDYEIVTYEDAREIGSVRFTDADSDIQYRIIRTGDGEIVIFFVERKGHYCEAEIFEYPDLETAAKDYAFILRRAGVI
Ga0308417_100098617F002982GGAGGVKIQFERHPHAICVVLTDAGECDRIINVARASDAIDAFALDIHTAAHKPLDALFALPRVVLVEIERREGGWRVEVAYWHKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308417_100098619F007976AGGAMPSTELSNFLRVALDIQETPFVGVHVADGVMLATDGVMLVAKKFDDLVFLRGEGAISPKAARVLEALAEATWIGSVAVVGNRVTVTARSTRYEENVGEVAGEYCEVKLPDFHCPRVQIKRMLGKLEDEALGWELLPLSDNPKFKALKEMSSKEYVALVDTPRGGEELFRPKADGDTRWYSVAQLRRGLRLFGKNSRLSVRRSSSGWLAFGDQWGYTFAVTPFVKHN
Ga0308417_10009862F006252AGGAGGMRSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDFLIVDDERPIAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFIDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308417_100098620F043176AGGAGGMLQTYKIWEGERTFLPGDDTGKFTIIEITGEELGWFEDVIDGKTYYVYQTSEGKVVINIVEQNYGIGEPSRAVICRFSSLEEAAQSEQRYALEELRLI
Ga0308417_100098621F006418AGGAGMPKRRSTPAPRPAREIVIDSGDDFKIIFDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRREDARRGE
Ga0308417_100098622F010840AGGAGGMNLPFSQPLDKITYGALAAATVIILTWALREFVGIDLPAEVQSALVVIFGYVVSYHIPLSEVEVEAIARKYYRNYK
Ga0308417_100098623F016404N/AMTIDELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFDEQPNAERDVLVIVDEAAFVKTV
Ga0308417_100098626F005631GGAGMRVSVSVDLDNALRKLLPRAARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASLRDAAEAAKKEAIAVLKERGR
Ga0308417_10009865F004307AGGAMFKELIGNSGNGRERPELNGAYIGRFLSIKERQRPTFETRLSPEPVMEDAFVFEFEVEDDDGNPLRVSKWVRKPARLDHPGKSGKTTNLYKVLAWLYGVSVMTDEQLANAEEFVQNAIGREYQLTLETKPNGWCEIVHIAPVRARLRKTKEDEVPF
Ga0308417_10009867F018115AGGAGMSDEAERFVRWYAHLAADAPLDRHAARALLRRALADREALAEFLLEQCTPALLGEFINRHWNDALSDALDSAALRLALRVMHAVWRIEDDRDRRAVLFCFRRGIIPSAKMMRQICVVVRN
Ga0308417_10009868F005028GGTGGMRDDDLRAAMRFFAERLRGVDGDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYVDLDAAAEAHLGLCWRLDENVVAVLSDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQLLAKELERKHRNVVED
Ga0308417_10009869F032180AGGAMWWKIEEIPHQELEEWTHAVGRFERAAKRDVAVRAAGAFVIYDLNGTLGYVAGREAPDGAYLVERWVRGKKGWTLYE
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