Scaffold Ga0308417_1000328

Overview

Basic Information

• Taxon OID: 3300031950
• Scaffold ID: Ga0308417_1000328
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35537
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (30.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F023603	Metagenome / Metatranscriptome	209	N
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F054062	Metagenome / Metatranscriptome	140	N
F060935	Metagenome / Metatranscriptome	132	N
F061874	Metagenome / Metatranscriptome	131	N
F068874	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308417_100032810	F038584	N/A	MTEEIKQIQKAGEELLATLHATAATEEETRTLDAISKAAAHIRQQLREQMPSAGTRIKVSELRSARKLMQRYVQKTTVGANTPREYVGESFYVTRQPVIDFIQDYLRTETLDVLAEITQNRLNPFTGAPATVGEGAAKPSMATTPQRLSTTHNKLAFTDLITDEAIFSYPNIVDFLIWHGAYRLEVLLHNNLIAAMAAVATAASLPTGIISPQMIDLLIYMRAFHDLQAAIGPRGDWPAQAAILPFPYYWRLRFGALKDTIGQYLQLDRQLEGLALIPAGTAQTNPTIVFNENELEVFFFGDISVNFGRVFDGGSETNVRRLAMDLYYAPLSHAGRPVIVADTQNAINSMA
Ga0308417_100032812	F023603	N/A	MLYTTADFTGQYRLDSNAITQADYQRAIDEHERVLLEYFFELDSVEKIYAALPAAAPAVGVRNVLRDLALPFIFGRIKMGVGSSVAGEPNTQGYTRIGNTPYLAYRGSETLRRLMRFAPFVVQAELAAPTATIPYHSPNPQAPDFVAIGAPVRAYTATGEVQTAVVSVTATDITLASPLPTGPVRVIVENLRIRIRRAYLTF
Ga0308417_100032813	F054062	N/A	MGKLLSKLHKLLGRLRNLLSKLLSKLLSKLLRRRNLRELSWRDFCDGLDKDPPDDVQKEAEHVFFDHVFPEALLTFFQNASELLLLYEAALSAPAMKPIADAKFNELFKQNPIPFYESLIPALKSLGAEPEKATFLEICAFLTTYKS
Ga0308417_100032817	F060935	N/A	MTNSHPKKTPDFAHPQGNGVAGEVAKENRRTKEYKARVAAERHVLRTGDTKTIWGKYLRYLYAELLKTYFGHKYDPDVRERFADLFLSTMEAYFAKEKRPLRCYLPALTYLLWQSHGMPSEAARLEWAFERIDWRLDAVFAESELVRRILRLAAVVETNGAPPTWVSDWNFHAYALKGGLPRKKPPVTLTLSHLLTANYPPLDWLKFFAVEAGRPDLLFGLDGLTPVLKKPNSPIL
Ga0308417_100032827	F061874	AGG	MTASKNVGQSPKRSETPLWRRKTNYVLRELVRMWHGRPYDSAVSWGFRYALDDILHTFAKENDLPIPKLFFWFERFWEKYSGYLGERVFTALDRSKLMDILLRGFPPSRAELCKRFLYDQSVYGIMHLYSVLFLWEVGRGNRVLCYKREKWPLGYYESLEVAPLDSFVIWQVKRMLNEQSDPQ
Ga0308417_10003285	F068874	GAG	VFGRLRRVLRFYERVELPDVPAQAQALSHGGRTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTAKMKRKLGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRAGLRKALLAALLGCAPLKKAKSVQSVEVAVRREEVVAQETLRLTTLLNDTIHLRNERLVIQYDTIRQMLRIEQVRPVVVVRDSVIRQNVVMQALTGVAEERAEKRLSWWKRWGQGVFALMLGLSLLGFIGYLWLRALRIG
Ga0308417_10003286	F007033	GAG	MQCRCSQPLWALGIPDCHPVLRPIRRIAFERVLENSSTPEDFNLLTSALYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPAEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSVNEAAPIPIEPGTVQVRLLFPSDATITKYEFSFDFAQSLMDFELVPVFADAGLLNYVPGIAARILLSGNATTLQALIYALYSRGAGDLYIPITGLAAYLELRDNANTLITTNFTEVAPGAYQASSLSLPPSGNPYTLRVGTSAPSGAFDYTTAVAQFRV
Ga0308417_10003287	F024322	N/A	MSLLRKLHNARQRRILRLVDPVLQQFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFVREYDVSTYAFPFSAEERVAFHPPPIFVAHYNEFSQIAARQKDAFLAVIPDARMGKSEWGEVEHEAFFFAPAVDTEEFEVQLDRIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV