Scaffold Ga0214473_10086790

Overview

Basic Information

• Taxon OID: 3300031949
• Scaffold ID: Ga0214473_10086790
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3655
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 197

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017017	Metagenome / Metatranscriptome	243	Y
F032348	Metagenome	180	Y
F054195	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214473_100867902	F054195	GAG	MNPYWLIVAFTMLAQLVMFLRWLHRRMRDEEIERAFIRDVAVNHLPHIYHALRLIATHLEIELGEPPPVRFLDLNGSSTRPPHG
Ga0214473_100867906	F032348	N/A	MLVRAYTDADLDALRAMHAAQGFDYQLPDPNDPLFLVRAVLEDNGRPRMAAFLRLTAETYLLADPRDGAPRQRWQWLLALHEATRQSAAAHGLADVQAFLPPRVARAFGRRLEKLGWRRDPWPCYTRALP
Ga0214473_100867907	F017017	N/A	MLTIPQLAKLKTRDPYLYESLRQVVAAVNALGRATGVDPGGSIEPPAPIGSLAVAAANGIFDLAITDNSPVNRGIFYFAESDTSPSFTAPRVYFLGCSRNLRLALGNLTLYWRAYSQYLGSLPSPPVTFGSPPAAVVGGGSTGPSLAPSAGSGTAKAQQGGSGFGRDLTLTRNDTPLR