NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214473_10002644

Scaffold Ga0214473_10002644


Overview

Basic Information
Taxon OID3300031949 Open in IMG/M
Scaffold IDGa0214473_10002644 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21981
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)197
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017017Metagenome / Metatranscriptome243Y
F032348Metagenome180Y
F047834Metagenome149Y
F054195Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0214473_1000264411F054195GAGMNPYWLVVAFTVLAQLVMFLRWLHRRMRDDEIERAFVRDMAGNHLPHIYHALRLIALHLQIELDEPPPVRFLELNGSNPRSPR
Ga0214473_1000264415F032348N/AMLVRAYTDADFDALRAMHAAQGFAYELPDPADPLFLVRAVLEENNRPRMAAFLRLTAETYLLADPRDGAPRQRWQWLLALHEATRQAAAAHGLADVQAFLPPPVARAFGRRLEKLGWRRDPWPCYTRAVP
Ga0214473_1000264416F017017N/AMLTIPQLAKLKSRDPYLYESLRQVVAAVNALGRATGVDPAGSIEPPAPIGSLAVAAADGIFDLAITDNSPVNRGIFYFAESDTSPSFTAPRVHFLGCSRNARLSLGNLTLYWRAYSQYLGSLPSPPVTFGSPPTAVVGGGSSGPVLAPSSGSGTAKPQQGGSGFGRDLTLNDTILR
Ga0214473_1000264424F047834GGAGMIRVLRETHQPPPSVERRLWLAGGANRFGEPNYRAVWGWSRLGWVGGKWEDRNAAGELLREVAELRYVPKYTPHDRWHIERWLPPEAYGSPREWYAQTLELANGRNIAALGPYPDRGEYEHCFTLENQHGDFVQLTPTVAEYIARAIEAGRSRYSRAERRRAIHAREQRAEKQYDTWAWEILGGRGSELNELPPAG
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