Scaffold Ga0310910_10155078

Overview

Basic Information

• Taxon OID: 3300031946
• Scaffold ID: Ga0310910_10155078
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1754
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000149	Metagenome / Metatranscriptome	1910	Y
F000728	Metagenome / Metatranscriptome	918	Y
F012020	Metagenome / Metatranscriptome	284	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310910_101550781	F012020	N/A	RSMIRSHLAQANRYIAEMKADIAREHVILKHALDVGHPLEVAESMLHALETALRIFEKHRQLVLDQLKRPLSE
Ga0310910_101550784	F000149	AGGAG	VTLILYYLAFMIGGAFAAYLLGLLVEYEWGTHVSLIVFLAVYFFSLWVAWMLAVWVTRPRDAASSAR
Ga0310910_101550785	F000728	N/A	NVNTGAFEVYNIANNQLIGAAPLGTVGLNWQLGGFAADPPTGAMGSPDAQPGSTSQLVQAMAGFGGGSGAADGLNAAPLGADISQQQFLTTPHA