NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310913_11163922

Scaffold Ga0310913_11163922


Overview

Basic Information
Taxon OID3300031945 Open in IMG/M
Scaffold IDGa0310913_11163922 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023500Metagenome209Y
F063392Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0310913_111639221F023500N/AETEMRALGLTIAIGLALGTSAQAAPVWHNTARIELGAAPPIELVRDGCGRGWHRSRWRDQSGDWHWGHCIPNGGPHDAWTAGWSHSYQDWRTEPPR
Ga0310913_111639222F063392GGCGGMFADEMGATLDLSPAAKLALIATIAAAIQAAVAEEGQKLTWV

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