NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310885_10108780

Scaffold Ga0310885_10108780


Overview

Basic Information
Taxon OID3300031943 Open in IMG/M
Scaffold IDGa0310885_10108780 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010872Metagenome / Metatranscriptome298Y
F054961Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0310885_101087801F010872N/AIGIPRTAAAQWDPFDPPRDPPHLDVSGTAGLRLSTDWSDLILLGSVSPATGALEQVLGRDLVFLPGPVFDATVMYWEGRYGFRAHGGFSRKCLAIAGRCVAIPTLDGPTRGSVSVDGYSADVGGAFGLREYHRNPWVWPYVFFGFGAVTYDIKQNVSPPLQMFIEQRPPANPDITVNKNLTGFGGQTLLIAIDELGLETKFAMNFGVGTDLRVPLGAAGVGLRLELSDTMHRSPLNIQIAELNTLAPDDVATANGGLVHNLRASAGLVLHFGR
Ga0310885_101087802F054961GGAMRLRLYAFIAALTVCLVTFADGLAAQTPEHRYAPGTAPIMVRPSALAQIVSELAGSPVNVQRARILWVIDSHAVVIESDSLFDPTWRDRDRVLVLLERNRSLSIPRPPVSIAPVNIIGIARTLLGIQAAQDVPWPQALTRHEIERLGI
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