NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310916_11734823

Scaffold Ga0310916_11734823


Overview

Basic Information
Taxon OID3300031942 Open in IMG/M
Scaffold IDGa0310916_11734823 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010290Metagenome / Metatranscriptome306Y
F085969Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0310916_117348231F085969GAGGMMTQRVALSGGWTGFSGVCCDDAAASAAAADLINILDTVDVPIVVVRRDFVTACFNKAAADTLGLSPSDIGRTPRDVSVLAGLSCLEEQCSQVIAG
Ga0310916_117348232F010290N/ARLERAVADALQETVGPDEARALETRLLSDYRPPFDMPRAQALLLALRQVLPAVADPVLHRSRSLYAA

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