Scaffold Ga0310916_10503658

Overview

Basic Information

• Taxon OID: 3300031942
• Scaffold ID: Ga0310916_10503658
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1031
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010338	Metagenome / Metatranscriptome	305	Y
F017114	Metagenome / Metatranscriptome	242	Y
F055340	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310916_105036581	F010338	N/A	EHVAGVEDYQVALATYRAACERWPGTPITLRQGARVIEDSRRLRVVSSQ
Ga0310916_105036583	F017114	GGAGG	MKRALIAIASVGILATTVGVEAANAQANVNPNIYPVTPGAQREPWEAGPGPMKRGAMCITHTDINRGYGFQGPCPAPKAAAAPKAMR
Ga0310916_105036584	F055340	N/A	CYSEIKSHAEVPWAKLEMCATIAFGIPLVVLILGWAFLGSAAKRS