NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310912_10078555

Scaffold Ga0310912_10078555


Overview

Basic Information
Taxon OID3300031941 Open in IMG/M
Scaffold IDGa0310912_10078555 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2392
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005858Metagenome / Metatranscriptome388Y
F007183Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0310912_100785551F007183N/AIGARLFPQRLDVSDGAYVVIKRLPMRNGEFEYQIRSVTERDERVVRESELRPQPLSRTGRQAAH
Ga0310912_100785554F005858N/AMCGRLAYEWESGMAHQYKAGDVVTVFQISPANELVIEGKATIRKRVADVDEQYRVEFANKPGAIYSRFVDSWGQDDPEKYVQDFNRHFNRRFG

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