Scaffold Ga0308174_10019072

Overview

Basic Information

• Taxon OID: 3300031939
• Scaffold ID: Ga0308174_10019072
• Source Dataset Name: Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4201
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017155	Metagenome	242	Y
F019678	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308174_100190722	F019678	GGA	MTSRTGLLPLFALLLASWPIPASAQSKQAVSITPVQSLSFGLLLPGLREAVSVTDVSRRAVVALAGDGPVDVALVLPSAMETATGERIPLRFAASDAALLTTSGTTLSVLDPLQVNRVQLGNDRTVLLVLGGTAVTSATTRPGHYTARVALLVNHPGT
Ga0308174_100190724	F017155	GAGG	MQRTVSILRRMIVALLLLGAVAAPARGQITAGMSTMADILTLPLTGVGTRALQFGVIVPGTTSVIVLPRTKSGGEFRIAGVKNRKAVDISFTLPTQLTGPAGASIPLSFNGNYAGLCEIDTTGACDLASYFTWNPVTTPTYHDVPTRYKPGRKVYTYDAYQVYLGGAASPSTTQRQGTYTASIGVLLVVN