Scaffold Ga0308175_100232142

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308175_100232142

Scaffold Ga0308175_100232142

Overview

Basic Information
Taxon OID	3300031938 Open in IMG/M
Scaffold ID	Ga0308175_100232142 Open in IMG/M
Source Dataset Name	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1839
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.8864	Long. (^o)	-122.2981	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026848	Metagenome / Metatranscriptome	196	Y
F045310	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308175_1002321422	F045310	GGAG	MVRKTREQVWRELDAIGEDEVRQRLSSKPTEIEEPGLIREWLEQRDRVNAALADTSREVSARQQGLSRNVKRAIGSAALIGVAAIALGFLLARRRR
Ga0308175_1002321424	F026848	N/A	MLRPTSVALVAAVSFVQPLAAQDDRWQISLDNDQYVWDIRLVRLEGDSLFVRQSDSLVGVPLAHIRELRLIRKSEVQLGGGDAGGAMNALMGSDDEVYDLSPLEFADRVRTVQKILLMHPPATSP

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