Scaffold Ga0308175_100000019

Overview

Basic Information

• Taxon OID: 3300031938
• Scaffold ID: Ga0308175_100000019
• Source Dataset Name: Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 140430
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (68.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006327	Metagenome / Metatranscriptome	376	Y
F012524	Metagenome / Metatranscriptome	280	Y
F017527	Metagenome / Metatranscriptome	240	Y
F028903	Metagenome / Metatranscriptome	190	Y
F032847	Metagenome / Metatranscriptome	179	Y
F041385	Metagenome / Metatranscriptome	160	Y
F045020	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308175_100000019104	F045020	AGGA	MPMLHGCAFPGCSTFTLSTYCVEHELLVRALKESERAHGASLVDHPEDAPLSAETASEAQEPAAL
Ga0308175_1000000197	F006327	AGGGGG	MVQVTIETGSRAEAELIAEELPTKAEAQSWRGFGVIRLAAKSKKDVQELIDSVSRGFDAHGLQWARVRYDDEERVFKANGHRAG
Ga0308175_10000001974	F028903	GAG	MNLTQLAPDEPLSPELVLILSPELRVQALARLGPPVWPAPRPRTAHAPAPARPSFRRSLAVALVARVGQLGLVFAVVTIATLAMSIVAHAVR
Ga0308175_10000001978	F017527	AGGAG	MAAVRRGSWVALRYVTALFFLGVVVQFFLVGYGLFAMKHGATIDDAKSLDSHRGLGWILSTYGAPLMLILVLLAWPARRLLWAWIVLAVLGFFQAILAAGGYHHWGLGMFHPVNAVILLGLSGRLAHYAWTTAKSRDAAAAPATAPSG
Ga0308175_10000001983	F012524	N/A	MDVSAGISTDTADASGAPRRSDKIARLLREIDALIADDEAADRQISGGWRTFSDIMAAAHTHTWDAYNVDLSRDSESFRRLSRRRQDAVRRVFGTIYRAESIVDDWMDRIVAALPREPDYDSMRAALMTQEHDERMHRGSLLRVATEVLGVEAADADRMARKYNNFVAEILFDRFDDEMRHLLRPNRPIEDVFTAIFIYGVISEDVVANSDVVIRRAKGNALYDAFDLPGMKEGQTHVRRDEGRHVRIAVLATHRFLEEFDGAAERLLGISTDYMDLADRMVRRAKASRGLIDAHLAESYGPDVDSLYYYVMNMKRLAVRLDELGLREGVFEVKRRVDAAIAELSGADGEPIVETPSRLLRIVGPKVLKLAGASRLAS
Ga0308175_10000001988	F041385	AGGAGG	VRRIVLFGLVLFVATVAAAAAATGGLPNIGKPSMKTQPVYRGYYDHHIDTYLVTDVSSKSQATAMHVNFSAELKAVKGLPEQYFVRGRAAKGQLTIFGSEPGEADYNPLWKEVWLTWKKGVKPVLIGQDDQIDALEKQGKLTEKDAHIVLNAPILKVGKGG
Ga0308175_1000000199	F032847	GAG	MLELAMFAGLGLVAVWAYCRYPRLRPGSLVIAAIHVIVSFGGFALLPTALSWLLPVLPTHALQRCVVLALLIATLTYVLLSWVWLLARILHDLFGGTPRGGHPVAHGS