NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306921_10873589

Scaffold Ga0306921_10873589


Overview

Basic Information
Taxon OID3300031912 Open in IMG/M
Scaffold IDGa0306921_10873589 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1023
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016779Metagenome244Y
F103694Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0306921_108735892F103694N/AVPGYTDPLRTDLEKKNDREIERAYQSTVKSTDKEEKKPDPWGDVRPTPPAATKNKQ
Ga0306921_108735893F016779GAGGMNAWIIKTETYDSEQALQIVEDQRTKGYNAWIEDETGAAVDEQSLKMNGLLATKRTLSDRLMGPFLGLAS

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