NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306921_10139081

Scaffold Ga0306921_10139081


Overview

Basic Information
Taxon OID3300031912 Open in IMG/M
Scaffold IDGa0306921_10139081 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2836
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049907Metagenome146Y
F076461Metagenome118Y
F096429Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0306921_101390811F096429N/ARASSLENKTTVKIKIGFITSFAVVIALGGCATTKESASWEKNKGVTIVHHRRRTSSGLVDRIDALGKNGVVSRAEIHVYDVGRYIDSNGNTHEAHQIYRVAQSPRPLLTLPKDTHPTGPRTVYTPPNYTPMPNDQRINDGITDTRKAKEKLEAERKQIEDRLAQDNNIRGELQTQIDENERLRAQIDAGMSARKHSEQSSRDFSNGQLVEASGGRLVLDVSDQVQQQLKPLLPSHKGRSQFTKRPEKPSE
Ga0306921_101390813F049907N/AMSENGQTDRPVPPELSVMLDLYADEGDRDAIRRAYFGLAHGDPSTFAVQFSVLLTAHAQALKAYQRPDLDIQKAQVDVSRLIAAVDNLTARCENVSQTIQIVECLTRKRLRWALTIAFSAGILIIPVPDLLTGSLRGLLHW
Ga0306921_101390814F076461AGGMNDTHQTPLQEAISFLTIGAILVAVGCYLAATHNVPVASPALFWVASMVYHWFPGLNALRAPKIPMLVSAAAVGGAFFVVGISFAGLLATWFSSAHMASLERQTEKLRRNRMRIQKRHRDRDGYDAK
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